Source code for camcops_server.tasks.qolbasic

#!/usr/bin/env python

"""
camcops_server/tasks/qolbasic.py

===============================================================================

    Copyright (C) 2012-2019 Rudolf Cardinal (rudolf@pobox.com).

    This file is part of CamCOPS.

    CamCOPS is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    CamCOPS is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with CamCOPS. If not, see <http://www.gnu.org/licenses/>.

===============================================================================

"""

from typing import List, Optional

from cardinal_pythonlib.maths_py import mean
import cardinal_pythonlib.rnc_web as ws
from sqlalchemy.sql.sqltypes import Float

from camcops_server.cc_modules.cc_constants import CssClass
from camcops_server.cc_modules.cc_ctvinfo import CTV_INCOMPLETE, CtvInfo
from camcops_server.cc_modules.cc_html import answer, identity, tr
from camcops_server.cc_modules.cc_request import CamcopsRequest
from camcops_server.cc_modules.cc_snomed import SnomedExpression, SnomedLookup
from camcops_server.cc_modules.cc_sqla_coltypes import (
    CamcopsColumn,
    PermittedValueChecker,
)
from camcops_server.cc_modules.cc_summaryelement import SummaryElement
from camcops_server.cc_modules.cc_task import Task, TaskHasPatientMixin
from camcops_server.cc_modules.cc_trackerhelpers import TrackerInfo


# =============================================================================
# QoL-Basic
# =============================================================================

DP = 3


[docs]class QolBasic(TaskHasPatientMixin, Task): """ Server implementation of the QoL-Basic task. """ __tablename__ = "qolbasic" shortname = "QoL-Basic" provides_trackers = True tto = CamcopsColumn( "tto", Float, permitted_value_checker=PermittedValueChecker(minimum=0, maximum=10), comment="Time trade-off (QoL * 10). Prompt: ... Indicate... the " "number of years in full health [0-10] that you think is " "of equal value to 10 years in your current health state." ) rs = CamcopsColumn( "rs", Float, permitted_value_checker=PermittedValueChecker(minimum=0, maximum=100), comment="Rating scale (QoL * 100). Prompt: Mark the point on the " "scale [0-100] that you feel best illustrates your current " "quality of life." ) TASK_FIELDS = ["tto", "rs"]
[docs] @staticmethod def longname(req: "CamcopsRequest") -> str: _ = req.gettext return _("Quality of Life: basic assessment")
[docs] def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]: return [ TrackerInfo( value=self.get_tto_qol(), plot_label="Quality of life: time trade-off", axis_label="TTO QoL (0-1)", axis_min=0, axis_max=1 ), TrackerInfo( value=self.get_rs_qol(), plot_label="Quality of life: rating scale", axis_label="RS QoL (0-1)", axis_min=0, axis_max=1 ), ]
[docs] def get_clinical_text(self, req: CamcopsRequest) -> List[CtvInfo]: if not self.is_complete(): return CTV_INCOMPLETE tto_qol = self.get_tto_qol() rs_qol = self.get_rs_qol() mean_qol = mean([tto_qol, rs_qol]) return [CtvInfo( content=( f"Quality of life: time trade-off " f"{ws.number_to_dp(tto_qol, DP)}, " f"rating scale {ws.number_to_dp(rs_qol, DP)}, " f"mean {ws.number_to_dp(mean_qol, DP)}." ) )]
[docs] def get_summaries(self, req: CamcopsRequest) -> List[SummaryElement]: return self.standard_task_summary_fields() + [ SummaryElement( name="tto_qol", coltype=Float(), value=self.get_tto_qol(), comment="Quality of life (0-1), from time trade-off method"), SummaryElement( name="rs_qol", coltype=Float(), value=self.get_rs_qol(), comment="Quality of life (0-1), from rating scale method"), ]
[docs] def is_complete(self) -> bool: return ( self.all_fields_not_none(QolBasic.TASK_FIELDS) and self.field_contents_valid() )
def get_tto_qol(self) -> Optional[float]: return self.tto / 10 if self.tto is not None else None def get_rs_qol(self) -> Optional[float]: return self.rs / 100 if self.rs is not None else None
[docs] def get_task_html(self, req: CamcopsRequest) -> str: tto_qol = self.get_tto_qol() rs_qol = self.get_rs_qol() mean_qol = mean([tto_qol, rs_qol]) h = """ <div class="{CssClass.SUMMARY}"> <table class="{CssClass.SUMMARY}"> {tr_is_complete} {mean_qol} </table> </div> <div class="{CssClass.EXPLANATION}"> Quality of life (QoL) has anchor values of 0 (none) and 1 (perfect health), and can be asked about in several ways. </div> <table class="{CssClass.TASKDETAIL}"> <tr> <th width="33%">Scale</th> <th width="33%">Answer</th> <td width="33%">Implied QoL</th> </tr> {tto} {rs} </table> """.format( CssClass=CssClass, tr_is_complete=self.get_is_complete_tr(req), mean_qol=tr( "Mean QoL", answer(ws.number_to_dp(mean_qol, DP, default=None), formatter_answer=identity) ), tto=tr( self.wxstring(req, "tto_q_s"), answer(ws.number_to_dp(self.tto, DP, default=None)), answer(ws.number_to_dp(tto_qol, DP, default=None), formatter_answer=identity) ), rs=tr( self.wxstring(req, "rs_q_s"), answer(ws.number_to_dp(self.rs, DP, default=None)), answer(ws.number_to_dp(rs_qol, DP, default=None), formatter_answer=identity) ), ) return h
[docs] def get_snomed_codes(self, req: CamcopsRequest) -> List[SnomedExpression]: if not self.is_complete(): return [] return [SnomedExpression(req.snomed(SnomedLookup.QOL_SCALE))]