Source code for camcops_server.tasks.pdss

#!/usr/bin/env python

"""
camcops_server/tasks/pdss.py

===============================================================================

    Copyright (C) 2012-2019 Rudolf Cardinal (rudolf@pobox.com).

    This file is part of CamCOPS.

    CamCOPS is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    CamCOPS is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with CamCOPS. If not, see <http://www.gnu.org/licenses/>.

===============================================================================

"""

from typing import Any, Dict, List, Tuple, Type

import cardinal_pythonlib.rnc_web as ws
from cardinal_pythonlib.stringfunc import strseq
from sqlalchemy.ext.declarative import DeclarativeMeta
from sqlalchemy.sql.sqltypes import Float, Integer

from camcops_server.cc_modules.cc_constants import (
    CssClass,
    DATA_COLLECTION_UNLESS_UPGRADED_DIV,
)
from camcops_server.cc_modules.cc_ctvinfo import CTV_INCOMPLETE, CtvInfo
from camcops_server.cc_modules.cc_db import add_multiple_columns
from camcops_server.cc_modules.cc_html import answer, tr
from camcops_server.cc_modules.cc_request import CamcopsRequest
from camcops_server.cc_modules.cc_snomed import SnomedExpression, SnomedLookup
from camcops_server.cc_modules.cc_summaryelement import SummaryElement
from camcops_server.cc_modules.cc_task import Task, TaskHasPatientMixin
from camcops_server.cc_modules.cc_trackerhelpers import TrackerInfo


# =============================================================================
# PDSS
# =============================================================================

DP = 3


class PdssMetaclass(DeclarativeMeta):
    # noinspection PyInitNewSignature
    def __init__(cls: Type['Pdss'],
                 name: str,
                 bases: Tuple[Type, ...],
                 classdict: Dict[str, Any]) -> None:
        add_multiple_columns(
            cls, "q", 1, cls.NQUESTIONS,
            minimum=cls.MIN_PER_Q, maximum=cls.MAX_PER_Q,
            comment_fmt="Q{n}, {s} (0-4, higher worse)",
            comment_strings=[
                "frequency",
                "distressing during",
                "anxiety about panic",
                "places or situations avoided",
                "activities avoided",
                "interference with responsibilities",
                "interference with social life",
            ]
        )
        super().__init__(name, bases, classdict)


[docs]class Pdss(TaskHasPatientMixin, Task, metaclass=PdssMetaclass): """ Server implementation of the PDSS task. """ __tablename__ = "pdss" shortname = "PDSS" provides_trackers = True MIN_PER_Q = 0 MAX_PER_Q = 4 NQUESTIONS = 7 QUESTION_FIELDS = strseq("q", 1, NQUESTIONS) MAX_TOTAL = MAX_PER_Q * NQUESTIONS MAX_COMPOSITE = 4
[docs] @staticmethod def longname(req: "CamcopsRequest") -> str: _ = req.gettext return _("Panic Disorder Severity Scale")
[docs] def get_trackers(self, req: CamcopsRequest) -> List[TrackerInfo]: return [TrackerInfo( value=self.total_score(), plot_label="PDSS total score (lower is better)", axis_label=f"Total score (out of {self.MAX_TOTAL})", axis_min=-0.5, axis_max=self.MAX_TOTAL + 0.5 )]
[docs] def get_summaries(self, req: CamcopsRequest) -> List[SummaryElement]: return self.standard_task_summary_fields() + [ SummaryElement( name="total_score", coltype=Integer(), value=self.total_score(), comment=f"Total score (/ {self.MAX_TOTAL})" ), SummaryElement( name="composite_score", coltype=Float(), value=self.composite_score(), comment=f"Composite score (/ {self.MAX_COMPOSITE})" ), ]
[docs] def get_clinical_text(self, req: CamcopsRequest) -> List[CtvInfo]: if not self.is_complete(): return CTV_INCOMPLETE t = self.total_score() c = ws.number_to_dp(self.composite_score(), DP, default="?") return [CtvInfo( content=f"PDSS total score {t}/{self.MAX_TOTAL} " f"(composite {c}/{self.MAX_COMPOSITE})" )]
def total_score(self) -> int: return self.sum_fields(self.QUESTION_FIELDS) def composite_score(self) -> int: return self.mean_fields(self.QUESTION_FIELDS)
[docs] def is_complete(self) -> bool: return ( self.field_contents_valid() and self.all_fields_not_none(self.QUESTION_FIELDS) )
[docs] def get_task_html(self, req: CamcopsRequest) -> str: h = """ <div class="{CssClass.SUMMARY}"> <table class="{CssClass.SUMMARY}"> {complete_tr} <tr> <td>Total score</td> <td>{total} / {tmax}</td> </td> <tr> <td>Composite (mean) score</td> <td>{composite} / {cmax}</td> </td> </table> </div> <table class="{CssClass.TASKDETAIL}"> <tr> <th width="60%">Question</th> <th width="40%">Answer ({qmin}{qmax})</th> </tr> """.format( CssClass=CssClass, complete_tr=self.get_is_complete_tr(req), total=answer(self.total_score()), tmax=self.MAX_TOTAL, composite=answer(ws.number_to_dp(self.composite_score(), DP, default="?")), cmax=self.MAX_COMPOSITE, qmin=self.MIN_PER_Q, qmax=self.MAX_PER_Q, ) for q in range(1, self.NQUESTIONS + 1): qtext = self.wxstring(req, "q" + str(q)) a = getattr(self, "q" + str(q)) atext = (self.wxstring(req, f"q{q}_option{a}", str(a)) if a is not None else None) h += tr(qtext, answer(atext)) h += """ </table> """ + DATA_COLLECTION_UNLESS_UPGRADED_DIV return h
[docs] def get_snomed_codes(self, req: CamcopsRequest) -> List[SnomedExpression]: if not self.is_complete(): return [] return [SnomedExpression( req.snomed(SnomedLookup.PDSS_SCALE), { req.snomed(SnomedLookup.PDSS_SCORE): self.total_score(), } )]