Source code for camcops_server.tasks.deakin_s1_healthreview

#!/usr/bin/env python

"""
camcops_server/tasks/deakin_s1_healthreview.py

===============================================================================

    Copyright (C) 2012-2019 Rudolf Cardinal (rudolf@pobox.com).

    This file is part of CamCOPS.

    CamCOPS is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    CamCOPS is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with CamCOPS. If not, see <http://www.gnu.org/licenses/>.

===============================================================================

"""

from sqlalchemy.sql.schema import Column
from sqlalchemy.sql.sqltypes import Integer, String, Text, UnicodeText

from camcops_server.cc_modules.cc_constants import CssClass
from camcops_server.cc_modules.cc_html import tr_qa
from camcops_server.cc_modules.cc_request import CamcopsRequest
from camcops_server.cc_modules.cc_sqla_coltypes import (
    BoolColumn,
    CamcopsColumn,
    MIN_ZERO_CHECKER,
    PermittedValueChecker,
    ZERO_TO_FOUR_CHECKER,
)
from camcops_server.cc_modules.cc_task import Task, TaskHasPatientMixin


# =============================================================================
# DeakinS1HealthReview
# =============================================================================

FREQUENCY_COMMENT = (
    "Frequency (0 did not use, 1 occasionally, 2 monthly, 3 weekly, 4 daily)"
)


[docs]class DeakinS1HealthReview(TaskHasPatientMixin, Task): """ Server implementation of the DeakinS1HealthReview task. """ __tablename__ = "deakin_1_healthreview" # historically fixed shortname = "Deakin_S1_HealthReview" ethnicity = CamcopsColumn( "ethnicity", Integer, permitted_value_checker=PermittedValueChecker(minimum=1, maximum=16), comment="Ethnicity code, per GMC Patient Questionnaire (1-16)" ) ethnicity_text = CamcopsColumn( "ethnicity_text", UnicodeText, exempt_from_anonymisation=True, comment="Ethnicity, description" ) # Seems to be unused by the client! ethnicity_other_details = Column( "ethnicity_other_details", UnicodeText, comment="Ethnicity, other, details" ) handedness = CamcopsColumn( "handedness", String(length=1), # was Text permitted_value_checker=PermittedValueChecker(permitted_values=["L", "R"]), # noqa comment="Handedness (L, R)" ) education = CamcopsColumn( "education", Text, exempt_from_anonymisation=True ) allergies = BoolColumn("allergies") allergy_asthma = BoolColumn("allergy_asthma") allergy_pollen_dust = BoolColumn("allergy_pollen_dust") allergy_dermatitis = BoolColumn("allergy_dermatitis") allergy_food = BoolColumn("allergy_food") allergy_dander = BoolColumn("allergy_dander") allergy_other = BoolColumn("allergy_other") allergy_details = Column("allergy_details", Text) vaccinations_last3months = BoolColumn("vaccinations_last3months") vaccination_details = Column("vaccination_details", Text) infections_last3months = BoolColumn("infections_last3months") infection_recent_respiratory = BoolColumn("infection_recent_respiratory") infection_recent_gastroenteritis = BoolColumn( "infection_recent_gastroenteritis", constraint_name="ck_deakin_1_healthreview_inf_recent_gastro" ) infection_recent_urinary = BoolColumn("infection_recent_urinary") infection_recent_sexual = BoolColumn("infection_recent_sexual") infection_recent_hepatitis = BoolColumn("infection_recent_hepatitis") infection_recent_other = BoolColumn("infection_recent_other") infection_recent_details = Column("infection_recent_details", Text) infections_chronic = BoolColumn("infections_chronic") infection_chronic_respiratory = BoolColumn("infection_chronic_respiratory") infection_chronic_gastroenteritis = BoolColumn( "infection_chronic_gastroenteritis", constraint_name="ck_deakin_1_healthreview_inf_chronic_gastro" ) infection_chronic_urinary = BoolColumn("infection_chronic_urinary") infection_chronic_sexual = BoolColumn("infection_chronic_sexual") infection_chronic_hepatitis = BoolColumn("infection_chronic_hepatitis") infection_chronic_other = BoolColumn("infection_chronic_other") infection_chronic_details = Column("infection_chronic_details", Text) immune_disorders = BoolColumn("immune_disorders") immunity_ms = BoolColumn("immunity_ms") immunity_sle = BoolColumn("immunity_sle") immunity_arthritis = BoolColumn("immunity_arthritis") immunity_hiv = BoolColumn("immunity_hiv") immunity_graves = BoolColumn("immunity_graves") immunity_diabetes = BoolColumn("immunity_diabetes") immunity_other = BoolColumn("immunity_other") immunity_details = Column("immunity_details", Text) family_history = BoolColumn("family_history") familyhistory_ms = BoolColumn("familyhistory_ms") familyhistory_sle = BoolColumn("familyhistory_sle") familyhistory_arthritis = BoolColumn("familyhistory_arthritis") familyhistory_graves = BoolColumn("familyhistory_graves") familyhistory_diabetes = BoolColumn("familyhistory_diabetes") familyhistory_psychosis_sz = BoolColumn("familyhistory_psychosis_sz") familyhistory_bipolar = BoolColumn("familyhistory_bipolar") familyhistory_details = Column("familyhistory_details", Text) health_anything_else = BoolColumn("health_anything_else") health_anything_else_details = Column( "health_anything_else_details", UnicodeText ) drug_history = Column("drug_history", UnicodeText) first_antipsychotic_medication = Column( "first_antipsychotic_medication", UnicodeText ) recreational_drug_in_last_3_months = BoolColumn( "recreational_drug_in_last_3_months", constraint_name="ck_deakin_1_healthreview_recdruglast3mo" ) recdrug_tobacco_frequency = CamcopsColumn( "recdrug_tobacco_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_tobacco_cigsperweek = CamcopsColumn( "recdrug_tobacco_cigsperweek", Integer, permitted_value_checker=MIN_ZERO_CHECKER, comment="Tobacco: cigarettes per week" ) recdrug_tobacco_prevheavy = BoolColumn("recdrug_tobacco_prevheavy") recdrug_cannabis_frequency = CamcopsColumn( "recdrug_cannabis_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_cannabis_jointsperweek = CamcopsColumn( "recdrug_cannabis_jointsperweek", Integer, permitted_value_checker=MIN_ZERO_CHECKER, comment="Cannabis: joints per week" ) recdrug_cannabis_prevheavy = BoolColumn("recdrug_cannabis_prevheavy") recdrug_alcohol_frequency = CamcopsColumn( "recdrug_alcohol_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_alcohol_unitsperweek = CamcopsColumn( "recdrug_alcohol_unitsperweek", Integer, permitted_value_checker=MIN_ZERO_CHECKER, comment="Alcohol: units per week") recdrug_alcohol_prevheavy = BoolColumn("recdrug_alcohol_prevheavy") recdrug_mdma_frequency = CamcopsColumn( "recdrug_mdma_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_mdma_prevheavy = BoolColumn("recdrug_mdma_prevheavy") recdrug_cocaine_frequency = CamcopsColumn( "recdrug_cocaine_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_cocaine_prevheavy = BoolColumn("recdrug_cocaine_prevheavy") recdrug_crack_frequency = CamcopsColumn( "recdrug_crack_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_crack_prevheavy = BoolColumn("recdrug_crack_prevheavy") recdrug_heroin_frequency = CamcopsColumn( "recdrug_heroin_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_heroin_prevheavy = BoolColumn("recdrug_heroin_prevheavy") recdrug_methadone_frequency = CamcopsColumn( "recdrug_methadone_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_methadone_prevheavy = BoolColumn("recdrug_methadone_prevheavy") recdrug_amphetamines_frequency = CamcopsColumn( "recdrug_amphetamines_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_amphetamines_prevheavy = BoolColumn( "recdrug_amphetamines_prevheavy", constraint_name="ck_deakin_1_healthreview_amphetprevheavy" ) recdrug_benzodiazepines_frequency = CamcopsColumn( "recdrug_benzodiazepines_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_benzodiazepines_prevheavy = BoolColumn( "recdrug_benzodiazepines_prevheavy", constraint_name="ck_deakin_1_healthreview_benzoprevheavy" ) recdrug_ketamine_frequency = CamcopsColumn( "recdrug_ketamine_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_ketamine_prevheavy = BoolColumn("recdrug_ketamine_prevheavy") recdrug_legalhighs_frequency = CamcopsColumn( "recdrug_legalhighs_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_legalhighs_prevheavy = BoolColumn("recdrug_legalhighs_prevheavy") recdrug_inhalants_frequency = CamcopsColumn( "recdrug_inhalants_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_inhalants_prevheavy = BoolColumn("recdrug_inhalants_prevheavy") recdrug_hallucinogens_frequency = CamcopsColumn( "recdrug_hallucinogens_frequency", Integer, permitted_value_checker=ZERO_TO_FOUR_CHECKER, comment=FREQUENCY_COMMENT ) recdrug_hallucinogens_prevheavy = BoolColumn( "recdrug_hallucinogens_prevheavy", constraint_name="ck_deakin_1_healthreview_hallucinogenprevheavy" ) recdrug_details = Column("recdrug_details", UnicodeText) recdrug_prevheavy = BoolColumn("recdrug_prevheavy") recdrug_prevheavy_details = Column( "recdrug_prevheavy_details", UnicodeText ) mri_claustrophobic = BoolColumn("mri_claustrophobic") mri_difficulty_lying_1_hour = BoolColumn("mri_difficulty_lying_1_hour") mri_nonremovable_metal = BoolColumn("mri_nonremovable_metal") mri_metal_from_operations = BoolColumn("mri_metal_from_operations") mri_tattoos_nicotine_patches = BoolColumn("mri_tattoos_nicotine_patches") mri_worked_with_metal = BoolColumn("mri_worked_with_metal") mri_previous_brain_scan = BoolColumn("mri_previous_brain_scan") mri_previous_brain_scan_details = Column( "mri_previous_brain_scan_details", UnicodeText ) other_relevant_things = BoolColumn("other_relevant_things") other_relevant_things_details = Column( "other_relevant_things_details", UnicodeText ) willing_to_participate_in_further_studies = BoolColumn( "willing_to_participate_in_further_studies", constraint_name="ck_deakin_1_healthreview_wtpifs" )
[docs] @staticmethod def longname(req: "CamcopsRequest") -> str: _ = req.gettext return _("Deakin JB — Antibody-mediated psychosis study — health review") # noqa
[docs] def is_complete(self) -> bool: return ( self.all_fields_not_none([ "ethnicity", "handedness", "education", "allergies", "vaccinations_last3months", "infections_last3months", "infections_chronic", "immune_disorders", "health_anything_else", "recreational_drug_in_last_3_months", "recdrug_prevheavy", "mri_claustrophobic", "mri_difficulty_lying_1_hour", "mri_nonremovable_metal", "mri_metal_from_operations", "mri_tattoos_nicotine_patches", "mri_worked_with_metal", "mri_previous_brain_scan", "other_relevant_things", "willing_to_participate_in_further_studies" ]) and self.field_contents_valid() )
def get_drug_frequency_row(self, fieldname: str) -> str: drug_frequency_dict = { 0: "Did not use", 1: "Occasionally", 2: "Monthly", 3: "Weekly", 4: "Daily" } frequency = drug_frequency_dict.get(getattr(self, fieldname), None) return tr_qa(fieldname, frequency)
[docs] def get_task_html(self, req: CamcopsRequest) -> str: def twocol_bool_row(fieldname: str) -> str: return self.get_twocol_bool_row(req, fieldname) return f""" <div class="{CssClass.SUMMARY}"> <table class="{CssClass.SUMMARY}"> {self.get_is_complete_tr(req)} </table> </div> <table class="{CssClass.TASKDETAIL}"> <tr> <th width="50%">Question</th> <th width="50%">Answer</th> </tr> """ + ( self.get_twocol_val_row("ethnicity") + # UNUSED BY CLIENT! # self.get_twocol_string_row("ethnicity_text") + # noqa self.get_twocol_string_row("ethnicity_other_details") + self.get_twocol_string_row("handedness") + self.get_twocol_string_row("education") + twocol_bool_row("allergies") + twocol_bool_row("allergy_asthma") + twocol_bool_row("allergy_pollen_dust") + twocol_bool_row("allergy_dermatitis") + twocol_bool_row("allergy_food") + twocol_bool_row("allergy_dander") + twocol_bool_row("allergy_other") + self.get_twocol_string_row("allergy_details") + twocol_bool_row("vaccinations_last3months") + self.get_twocol_string_row("vaccination_details") + twocol_bool_row("infections_last3months") + twocol_bool_row("infection_recent_respiratory") + twocol_bool_row("infection_recent_gastroenteritis") + twocol_bool_row("infection_recent_urinary") + twocol_bool_row("infection_recent_sexual") + twocol_bool_row("infection_recent_hepatitis") + twocol_bool_row("infection_recent_other") + self.get_twocol_string_row("infection_recent_details") + twocol_bool_row("infections_chronic") + twocol_bool_row("infection_chronic_respiratory") + twocol_bool_row("infection_chronic_gastroenteritis") + twocol_bool_row("infection_chronic_urinary") + twocol_bool_row("infection_chronic_sexual") + twocol_bool_row("infection_chronic_hepatitis") + twocol_bool_row("infection_chronic_other") + self.get_twocol_string_row("infection_chronic_details") + twocol_bool_row("immune_disorders") + twocol_bool_row("immunity_ms") + twocol_bool_row("immunity_sle") + twocol_bool_row("immunity_arthritis") + twocol_bool_row("immunity_hiv") + twocol_bool_row("immunity_graves") + twocol_bool_row("immunity_diabetes") + twocol_bool_row("immunity_other") + self.get_twocol_string_row("immunity_details") + twocol_bool_row("family_history") + twocol_bool_row("familyhistory_ms") + twocol_bool_row("familyhistory_sle") + twocol_bool_row("familyhistory_arthritis") + twocol_bool_row("familyhistory_graves") + twocol_bool_row("familyhistory_diabetes") + twocol_bool_row("familyhistory_psychosis_sz") + twocol_bool_row("familyhistory_bipolar") + self.get_twocol_string_row("familyhistory_details") + twocol_bool_row("health_anything_else") + self.get_twocol_string_row("health_anything_else_details") + self.get_twocol_string_row("drug_history") + self.get_twocol_string_row("first_antipsychotic_medication") + twocol_bool_row("recreational_drug_in_last_3_months") + self.get_drug_frequency_row("recdrug_tobacco_frequency") + self.get_twocol_val_row("recdrug_tobacco_cigsperweek") + twocol_bool_row("recdrug_tobacco_prevheavy") + self.get_drug_frequency_row("recdrug_cannabis_frequency") + self.get_twocol_val_row("recdrug_cannabis_jointsperweek") + twocol_bool_row("recdrug_cannabis_prevheavy") + self.get_drug_frequency_row("recdrug_alcohol_frequency") + self.get_twocol_val_row("recdrug_alcohol_unitsperweek") + twocol_bool_row("recdrug_alcohol_prevheavy") + self.get_drug_frequency_row("recdrug_mdma_frequency") + twocol_bool_row("recdrug_mdma_prevheavy") + self.get_drug_frequency_row("recdrug_cocaine_frequency") + twocol_bool_row("recdrug_cocaine_prevheavy") + self.get_drug_frequency_row("recdrug_crack_frequency") + twocol_bool_row("recdrug_crack_prevheavy") + self.get_drug_frequency_row("recdrug_heroin_frequency") + twocol_bool_row("recdrug_heroin_prevheavy") + self.get_drug_frequency_row("recdrug_methadone_frequency") + twocol_bool_row("recdrug_methadone_prevheavy") + self.get_drug_frequency_row("recdrug_amphetamines_frequency") + twocol_bool_row("recdrug_amphetamines_prevheavy") + self.get_drug_frequency_row("recdrug_benzodiazepines_frequency") + twocol_bool_row("recdrug_benzodiazepines_prevheavy") + self.get_drug_frequency_row("recdrug_ketamine_frequency") + twocol_bool_row("recdrug_ketamine_prevheavy") + self.get_drug_frequency_row("recdrug_legalhighs_frequency") + twocol_bool_row("recdrug_legalhighs_prevheavy") + self.get_drug_frequency_row("recdrug_inhalants_frequency") + twocol_bool_row("recdrug_inhalants_prevheavy") + self.get_drug_frequency_row("recdrug_hallucinogens_frequency") + twocol_bool_row("recdrug_hallucinogens_prevheavy") + self.get_twocol_string_row("recdrug_details") + twocol_bool_row("recdrug_prevheavy") + self.get_twocol_string_row("recdrug_prevheavy_details") + twocol_bool_row("mri_claustrophobic") + twocol_bool_row("mri_difficulty_lying_1_hour") + twocol_bool_row("mri_nonremovable_metal") + twocol_bool_row("mri_metal_from_operations") + twocol_bool_row("mri_tattoos_nicotine_patches") + twocol_bool_row("mri_worked_with_metal") + twocol_bool_row("mri_previous_brain_scan") + self.get_twocol_string_row("mri_previous_brain_scan_details") + twocol_bool_row("other_relevant_things") + self.get_twocol_string_row("other_relevant_things_details") + twocol_bool_row( "willing_to_participate_in_further_studies") + "</table>" )