Source code for camcops_server.cc_modules.cc_simpleobjects

#!/usr/bin/env python

"""
camcops_server/cc_modules/cc_simpleobjects.py

===============================================================================

    Copyright (C) 2012-2019 Rudolf Cardinal (rudolf@pobox.com).

    This file is part of CamCOPS.

    CamCOPS is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    CamCOPS is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with CamCOPS. If not, see <http://www.gnu.org/licenses/>.

===============================================================================

**Simple struct-like classes.**

"""

import copy
from typing import List, TYPE_CHECKING

from pendulum import Date

from cardinal_pythonlib.datetimefunc import format_datetime
from cardinal_pythonlib.reprfunc import auto_repr

from camcops_server.cc_modules.cc_constants import DateFormat

if TYPE_CHECKING:
    from camcops_server.cc_modules.cc_request import CamcopsRequest

# Prefer classes to collections.namedtuple; both support type checking but
# classes support better parameter checking (and refactoring) via PyCharm.


# =============================================================================
# IdNumReference
# =============================================================================

[docs]class IdNumReference(object): """ A simple way of referring to an ID number. It's not stored in the database -- it's just an object to be passed around that encapsulates ``which_idnum`` and ``idnum_value``. As an example, suppose our administrator has defined ID type (``which_idnum``) 7 to be "NHS number". Then if a patient has NHS number 9999999999, we might represent this ID of theirs as ``IdNumReference(which_idnum=7, idnum_value=9999999999)``. """ def __init__(self, which_idnum: int, idnum_value: int) -> None: self.which_idnum = which_idnum self.idnum_value = idnum_value def __str__(self) -> str: return f"idnum{self.which_idnum}={self.idnum_value}" def __repr__(self) -> str: return auto_repr(self) def is_valid(self) -> bool: return ( self.which_idnum is not None and self.which_idnum > 0 and self.idnum_value is not None and self.idnum_value > 0 ) def __eq__(self, other: "IdNumReference") -> bool: if not isinstance(other, IdNumReference): return False return ( self.which_idnum == other.which_idnum and self.idnum_value == other.idnum_value ) def description(self, req: "CamcopsRequest") -> str: if not self.is_valid(): return "[invalid_IdNumReference]" return f"{req.get_id_shortdesc(self.which_idnum)} = {self.idnum_value}"
# ============================================================================= # HL7PatientIdentifier # ============================================================================= # noinspection PyShadowingBuiltins
[docs]class HL7PatientIdentifier(object): """ Represents a patient identifier for the HL7 protocol. """ def __init__(self, pid: str, id_type: str, assigning_authority: str) -> None: self.pid = pid # ... called "pid" not "id" as type checker sometimes thinks "id" must # be integer, as in Python's id(object). self.id_type = id_type self.assigning_authority = assigning_authority
# ============================================================================= # BarePatientInfo # =============================================================================
[docs]class BarePatientInfo(object): """ Represents information about a patient using a simple object with no connection to a database. In some situations we avoid using :class:`camcops_server.cc_modules.cc_patient.Patient`: specifically, when we would otherwise have to deal with mutual dependency problems and the use of the database (prior to full database initialization). """ def __init__(self, forename: str = None, surname: str = None, sex: str = None, dob: Date = None, address: str = None, gp: str = None, other: str = None, idnum_definitions: List[IdNumReference] = None) -> None: self.forename = forename self.surname = surname self.sex = sex self.dob = dob self.address = address self.gp = gp self.otherdetails = other self.idnum_definitions = idnum_definitions or [] # type: List[IdNumReference] # noqa def __str__(self) -> str: return ( "Patient(forename={f!r}, surname={sur!r}, sex={sex}, DOB={dob}, " "address={a!r}, gp={gp!r}, other={o!r}, idnums={i})".format( f=self.forename, sur=self.surname, sex=self.sex, dob=format_datetime(self.dob, DateFormat.ISO8601_DATE_ONLY), a=self.address, gp=self.gp, o=self.otherdetails, i="[{}]".format(", ".join( str(idnum) for idnum in self.idnum_definitions)), ) ) def __repr__(self) -> str: return auto_repr(self)
[docs] def add_idnum(self, idref: IdNumReference) -> None: """ Adds an ID number. No checks in relation to what's already present. Args: idref: a :class:`IdNumReference` """ self.idnum_definitions.append(idref)
# ============================================================================= # Raw XML value # =============================================================================
[docs]class XmlSimpleValue(object): """ Represents XML lowest-level items. See functions in ``cc_xml.py``. """ def __init__(self, value) -> None: self.value = value
# ============================================================================= # TaskExportOptions # =============================================================================
[docs]class TaskExportOptions(object): """ Information-holding object for options controlling XML and other representations of tasks. """ def __init__(self, db_patient_id_per_row: bool = False, db_make_all_tables_even_empty: bool = False, db_include_summaries: bool = False, include_blobs: bool = False, xml_include_ancillary: bool = False, xml_include_calculated: bool = False, xml_include_comments: bool = True, xml_include_patient: bool = False, xml_include_plain_columns: bool = False, xml_include_snomed: bool = False, xml_skip_fields: List[str] = None, xml_sort_by_name: bool = True, xml_with_header_comments: bool = False) -> None: """ Args: db_patient_id_per_row: generates an anonymisation staging database -- that is, a database with patient IDs in every row of every table, suitable for feeding into an anonymisation system like CRATE (https://doi.org/10.1186%2Fs12911-017-0437-1). db_make_all_tables_even_empty: create all tables, even empty ones include_blobs: include binary large objects (BLOBs) (applies to several export formats) xml_include_ancillary: include ancillary tables as well as the main? xml_include_calculated: include fields calculated by the task xml_include_comments: include comments in XML? xml_include_patient: include patient details? xml_include_plain_columns: include the base columns xml_include_snomed: include SNOMED-CT codes, if available? xml_skip_fields: fieldnames to skip xml_sort_by_name: sort by field/attribute names? xml_with_header_comments: include header-style comments? """ self.db_patient_id_in_each_row = db_patient_id_per_row self.db_make_all_tables_even_empty = db_make_all_tables_even_empty self.db_include_summaries = db_include_summaries self.include_blobs = include_blobs self.xml_include_ancillary = xml_include_ancillary self.xml_include_calculated = xml_include_calculated self.xml_include_comments = xml_include_comments self.xml_include_patient = xml_include_patient self.xml_include_plain_columns = xml_include_plain_columns self.xml_include_snomed = xml_include_snomed self.xml_skip_fields = xml_skip_fields or [] # type: List[str] self.xml_sort_by_name = xml_sort_by_name self.xml_with_header_comments = xml_with_header_comments
[docs] def clone(self) -> "TaskExportOptions": """ Returns a copy of this object. """ return copy.copy(self)